- How To Download A Fasta File On Mac Os
- How To Download A Fasta File
- How To Download A Fasta File On Mac Windows 10
Briefly, I have FASTQ file of around 1 gigabyte and I want to convert it into FASTA format to be able to treat this data using MEGA 6 software. Therefore, I kindly want to ask how can I convert. GBK to FASTA converter: GenBank to FASTA is a freeware program will convert GenBank (gbk) file format to FASTA format. ABI to FASTA converter: ABI to FASTA Converter is a free tool will convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button. Grid cell counter.
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Pick the Right Program
Start by choosing the right program to open your FASTA file. A few of the most common programs used to open FASTA files are listed below. One of them should be able to open your FASTA file.
- FASTA Format DNA and Protein Sequence Alignment
- dnaLIMS Fasta Library
Note the File Type
Other programs may be able to open your FASTA file, depending on the type of file it is. You can find the file type listed in the file’s properties. On a Windows PC, right-click the file, click 'Properties', then look under “Type of File.” On a Mac computer, right-click the file, click “More Info,” then look under “Kind”.
Tip: If it’s the FASTA file extension, it probably falls under the Data Files type, so any program used for Data Files should open your FASTA file.
Ask the Developer
Contacting the software developer is another easy way to get help opening a FASTA file. You can find the developers for the most common programs used to open FASTA files in the list below.
Software | Developer |
---|---|
FASTA Format DNA and Protein Sequence Alignment | PC Software Company |
dnaLIMS Fasta Library | dnaTools |
Use a Universal File Viewer
When all else fails, a universal file viewer is the best way to open a FASTA file. Programs like File Magic (Download) can open many different types of files, depending on the format. Although, some files may not be compatible with these programs. If your FASTA file isn’t compatible, it will only open in binary format.
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Unix/MacOSX source code for the FASTA programs is available from http://faculty.virginia.edu/wrpearson/fasta.
The latest versions of the program are in http://faculty.virginia.edu/wrpearson/fasta/CURRENT/ and http://faculty.virginia.edu/wrpearson/fasta/CURRENT/windows.
https://supernaljp200.weebly.com/wps-download-for-android-phone.html. The FASTA programs are also available from http://github.com/wrpearson/fasta36
Overview
To run the FASTA programs on your own computers, you will needto (1) download and install the programs, and (2)download some databases to search.
![Fasta Fasta](/uploads/1/3/3/2/133279476/662844726.png)
Current versions - A quick guide the the current versions on the FASTA download site can be found here.
The current version of the FASTAprograms is version 36, which includesfasta36, ssearch36, fastx/y36, tfastx/y36,prss36, prfx36, lalign36 etc. All of the fasta3 programscan be downloaded in a single file, either as Unix/MacOSX source codeor as a Windows ZIParchive. (The fasta3.tar.gz and fasta3/windows/fasta3.zip files are the same as the files in the CURRENT directory.
Version 36 of the FASTA programs includes several majorimprovements: statistical estimates are much more accurate; threadedversions of the program are more efficient; and version 36 nowincludes lalign36, a program that finds multiple local alignments usingWebb Miller's sim algorithm (and implementation of the Watermanand Eggert approach, PubMed)In addition, FASTAv36 includes ggsearch36and glsearch36, which perform optimal global-global andglobal-local alignments and searches.
Older versions -In the past, a complete installation of the FASTA programsrequired downloading both the fasta3 and fasta2programs, because some programs, notably lalignand align, were available only in fasta2. Nowthat lalign36 and ggsearch36 are available inthe fasta3 package, there is much less reason todownload fasta2. Nevertheless, the most recent version ofthe fasta2 programs can be downloaded as Unix/MacOSX source codeor as a Windows ZIP archive
How To Download A Fasta File On Mac Os
Downloading and Installing the FASTA3 programs
For Unix/Linux machines and MacOSX, the FASTA sourcecode file should be downloaded. Then:![How to download a fasta file on mac os How to download a fasta file on mac os](/uploads/1/3/3/2/133279476/821900465.gif)
How To Download A Fasta File
- Uncompress and 'un-tar' the
fasta3.tar.gz
file. At the Unix/Linux/MacOSX command line type:gunzip -c fasta3.tar.gz | tar xvf -
- The fasta36 distribution has
Makefile
's for mostcommon architectures, includinglinux
, Sun Solaris,MacOSX (both PowerPC and Intel),freebsd
, IBM/Aix,etc. in themake/
directory. To see a list of thepossible architectures, type (at the command line):ls -l make/Makefile.*
Once you have identified a Makefile for your machine,e.g.linux64_sse2
(64-bit linux with SSE2), you will need to move tothesrc/
directory:cd src/
and type:make -f ./make/Makefile.linux64_sse2 fasta36
To compile just the fasta program or:make -f ./make/Makefile.linux64_sse2 all
To compile all the programs. The program binaries are saved in the./bin
directory.You may encounter some warning messages, which can be ignored.Makefiles withsse2
(e.g. Makefile.linux32_sse2, Makefile.linux64_sse2, Makefile.os_x86, Makefile.os_x86_64)include an Intel SSE2 accelerated Smith-Waterman. These Smith-Watermanversions are typically more than 10-15X faster than unacceleratedversions, and can provide very fast sequence and profile Smith-Waterman searches.Makefile.os_x
is designed for older G4/G5 Mac OS machines and provides an Altivec acceleratedversion of Smith-Waterman,In addition, makefiles that includesql
in their name canbe used to make versions of the programs that can read SQL databasesdirectly. - Once the programs are compiled, you can test whether fastaworks by typing:
./bin/fasta36 -q ./seq/mgstm1.aa ./seq/prot_test.lseg
which runs a test query sequence against a small test library. - Once the programs are compiled, you may want to copy them to amore visible location, e.g.
/usr/local/bin
or/seqprg/bin
. The easiest way to copy all the programs isto edit theMakefile
you used and specify the executabledirectory in the line that starts:XDIR=/seqprg/bin
. You can then type:make -f./make/Makefile.linux64_sse2 install
to install the programs,andmake -f ./make/Makefile.linux clean-up
to remove unnecessaryfiles from the installation directory.